NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114996_10042014

Scaffold Ga0114996_10042014


Overview

Basic Information
Taxon OID3300009173 Open in IMG/M
Scaffold IDGa0114996_10042014 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4222
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025300Metagenome202Y
F028833Metagenome / Metatranscriptome190Y
F041248Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0114996_100420141F025300N/AMMKKINVETLVPDTFKFLARDMDGKLYAFENEPNVATNIACDTWDVKEGKFLQITNPVFLSEEGISHTGIDSELGDWRDSLTEINNENVA*
Ga0114996_100420142F041248GAGMKQHWKRARQEGAIKRTKESILVYEEKLKSCEDDTEKKLLKKKIERAQTTISNTKLT*
Ga0114996_100420143F028833N/AMSNLTYLWSDGMVDSIAKKVAEEPMENVDERPQHVIDEERGDAIRQWRKEQAQLEMFNDPVMNWSGLR*
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