NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114996_10142488

Scaffold Ga0114996_10142488


Overview

Basic Information
Taxon OID3300009173 Open in IMG/M
Scaffold IDGa0114996_10142488 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1982
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010274Metagenome / Metatranscriptome306Y
F077192Metagenome / Metatranscriptome117Y
F099138Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0114996_101424884F010274GAGGMLRRTEILNALEKMVEDFYEIGSDDAQYYEEIIGETMDIVLEYDE*
Ga0114996_101424885F099138GGAGMSYSAKSNISLCYNNDKAFIYRLIALEEEVEDWHAIDLEYDACYLNSDTKYIGLTSNPVKRAGAHRTSKGKNLVMQIFRVAKTPAMAKWYEAEAIGKFEVKFGKVPEFNIGSDRFDGA*
Ga0114996_101424886F077192GAGGMNNIKRNPSRIRKTAGRPRTNWIDSMTPQGQAIYCAEFVENASGFNPELELEEGKA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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