Scaffold Ga0073936_10004279

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073936_10004279

Scaffold Ga0073936_10004279

Overview

Basic Information
Taxon OID	3300009175 Open in IMG/M
Scaffold ID	Ga0073936_10004279 Open in IMG/M
Source Dataset Name	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19892
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.5637	Long. (^o)	22.044	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013252	Metagenome	273	Y
F018653	Metagenome	234	Y
F035623	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073936_1000427910	F013252	AGGAG	MADQKGFRQTYQETGKLSTGGGPDAKVEKGASGSKRASNADLKARPARSSKVGPDKNLKEVKTGNFY*
Ga0073936_1000427914	F035623	N/A	MTDKYVYQIQGTLENAAGEFKGLRILVCDLYNFDSVDVPVDILDNETAKYIQFRLNCTKEIMNIAKLPFKIQDNIRGPLGPWLDHWVQENFHGDFSNRKSLNS*
Ga0073936_1000427930	F018653	N/A	MYGLNGKRSRKPMSQYRYLLIDEFGAPLRRFVSRIEAQPYLTTGMSLKALPREPKANPYEMATLLLKEALI*

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