Scaffold Ga0073936

Basic Information
Taxon OID	3300009175 Open in IMG/M
Scaffold ID	Ga0073936_10019052 Open in IMG/M
Source Dataset Name	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0073936_10019052 Open in IMG/M

Source Dataset Name

Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7619
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7619

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.5637	Long. (^o)	22.044	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Finland: Lake Alinen Mustajarvi

Coordinates

Lat. (^o)

61.5637

Long. (^o)

22.044

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F040984	Metagenome	160	N
F046150	Metagenome	151	N
F053027	Metagenome	141	N
F057847	Metagenome	135	N
F059592	Metagenome	133	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0073936_100190524	F040984	AGGAG	MSTRNYKVEFDPTFFGGTYTGHGNHALIPEQLVEEVGMSAAFLKTTGHNPANIVHFAEDLRFDSKGLLCTDEPAIDTSTDSTVELAAEGTVQIPADEPIQFPEPTVIEIGDQPVQIETESQDVPRLSRRKQAA*
Ga0073936_100190526	F053027	AGGA	MLLTERQIDLRLKCPMFDMEDRHGPSSYECAQKLLRWAVLDAFKGRLVPVTTLRGKFESIWNGHTAGWAPDHQQAYYAGLRAGNTAARKTYLFLQHYEVLKPVEAYSVECAGDSIEGEYAVVLRRHDRRTDERPMILQAHEWRPAYCQQPSAIELIRYVHLMASTDYTVPGVYHLPLFRGEPWKMKSFDLPLVRKAVTSILDAVRNTGHPVPGSHCEDCATKPCRSLAHA*
Ga0073936_100190527	F057847	AGGAG	MPETLPVFMKGERKPINCFRDAEGFLVIDAVIGDDDLTVVSPDSGEERFRITDGEVTDLRPHEHEWAIDHSHCTVCNKSTQQINEEQDEQTHPTAVQ*
Ga0073936_100190528	F046150	GAGG	MNRPTQPQSSRLRVQAATSAVNAPIECPSCGSIFFIEAQAGMYTTSGAGYRNVNQAPQKVYLCPCGEIMIPSNYSSGVPAGSERDLFVQSLKLAIARRNSTTLDQIAQGTVSLAEHNRLKAQFEELATRFNTWAAGGEVPEPVELATNGDEETPEEEQSPEPAARITMRELGAAPLIATGTRGRSAAAAVQSTGDHKEITSTPATIYTGGARERMKRQGVQ*
Ga0073936_100190529	F059592	N/A	VNVEFLTGLELVSTKIFPLPGGVGRRQNPTAYDPRLTHLSGLTPVGDEVVYYEHIATVRHKATNKFFVAFKETMDAFLARSTDLQKYPEWLMKQPNKQAEREIHIYLVTRTPQSVSIMRSHEDWLAHIADVGTFDTLAYFLAQNNVIDEKALATLR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073936_10019052

Overview

Ecosystem & Geography

Associated Families

Sequences