Scaffold Ga0073936_10059841

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073936_10059841

Scaffold Ga0073936_10059841

Overview

Basic Information
Taxon OID	3300009175 Open in IMG/M
Scaffold ID	Ga0073936_10059841 Open in IMG/M
Source Dataset Name	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3435
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.5637	Long. (^o)	22.044	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069877	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073936_100598414	F069877	N/A	VKTKLISPSEDDLDNGWIQVDICMRLAFSYYVWQKHFQPANDASDECTFMRFAALQCTLLNIRALDEFFRNPKWPGDIRAKHYPRFTNPGPFLSLSESEQLHKLIVHLTYNRIYEFTTTWKTHTLLTRAYVHFKAFVDYIHDDYFSEQINIQASIHDMKNRYEGWLSEMNEIVETTRA*

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