NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105248_11806597

Scaffold Ga0105248_11806597


Overview

Basic Information
Taxon OID3300009177 Open in IMG/M
Scaffold IDGa0105248_11806597 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)693
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014599Metagenome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0105248_118065971F014599N/AMKRTVCLIFTLLFVVGPKFAQERSSAALEKIVRDTYRKLETYNAAAQVFQNELKRKALRAESNLKFELSDFRVGNVQEILHKPYVELVTLPSGDVIGLIRGGHSEDGGPQAATFAAAWERGQYASVFDPVWTVADVFHLEAARYYDIRTYVSYQVTVRLEGRSRNYRAVALFREAPDGPPEFWDTVVNGIGSVWEEKRPPYREKHATSGDTPTASLAIDGDG
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