NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114959_10000005

Scaffold Ga0114959_10000005


Overview

Basic Information
Taxon OID3300009182 Open in IMG/M
Scaffold IDGa0114959_10000005 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)157235
Total Scaffold Genes247 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)172 (69.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001091Metagenome / Metatranscriptome781Y
F043282Metagenome / Metatranscriptome156Y
F086845Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0114959_10000005117F043282AGGAMLKAEKFEVRDVIRSYDFKPMVGREDCFVEGEILEITNEQGYNAYKIIVTKDSWSDAEDKGRVGKIVYCPVAVFHNDYPGRVINLSRI*
Ga0114959_10000005218F001091AGGMNIRELAKKMAVEHKLPRADKYDLFLREFDNKVELIGLIQDPTLNMNDFRGREMLFPKRWVTLAVYEASYKVAV*
Ga0114959_100000058F086845GGAMPIEITNSLRSSSLIRVEGIGTYYANLDSLAVNTNEVISSANIRRINWSTNGSIQIVRNGNNIVSLHNAGETKLDEWGHTLANNNTSNVVITVVTGGTLLLEVTKSATYTTPLTGM*
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