Scaffold Ga0114959

Basic Information
Taxon OID	3300009182 Open in IMG/M
Scaffold ID	Ga0114959_10002251 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009182 Open in IMG/M

Scaffold ID

Ga0114959_10002251 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16081
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (54.55%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

16081

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (54.55%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004727	Metagenome / Metatranscriptome	426	Y
F038245	Metagenome / Metatranscriptome	166	Y
F045760	Metagenome / Metatranscriptome	152	N
F046374	Metagenome / Metatranscriptome	151	N
F066790	Metagenome / Metatranscriptome	126	N
F070116	Metagenome / Metatranscriptome	123	N
F078719	Metagenome / Metatranscriptome	116	Y
F095476	Metagenome / Metatranscriptome	105	N
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114959_1000225111	F046374	AGG	MAKSFGSIKSTKLGMMDKLTIGKFADCRICDIIADDFEYLIWLNKQGFVNFTAPVMSDLLARAGFKEAEEHYKNEIEPWKDTDVPF*
Ga0114959_1000225115	F038245	AGGA	MKIYFGNANEDMFADGLFHINENQFYYGVEHGTNAGGLDEVCLFDGCGRTLPIHMEAIPELIAALEEIRTIGEAVKRAQELTERAESNAEGQVTNIWNDSYEVEFDSE*
Ga0114959_1000225116	F045760	GGAG	MASVSKSKQAYSALYKSTTRWATNRKLKLTRVLKQQPNNEQIKDALTNIKYRRHTPTTKTVWSHNNIRIAKLFKEFTGHASQDLFSSNPKVQSAALAYRPNTEKLKVIEGKVSFSFGARAHDSKGNLIWK*
Ga0114959_1000225117	F078719	AGG	MEIIELYILFALTTGISSCYLFLVPAVNLAKDLNITNSFTKSTWLSYLIYIIITSITAPFSVLPIFIPSFAERFKIGLEKSVMESQI*
Ga0114959_1000225118	F099303	AGG	MNFIEFTYTKADGTESKRAVLPLVGPTKFVEGIDVSQMPEDEFVVFCRDFSAMKSAQHEQTMAMLEQFDLKHNYRRFIPEQMSDITTDYV*
Ga0114959_1000225119	F070116	N/A	MSKFKAWDSEILANAVKISLQIRSKIEEMCITTRTPPNGLPNSLIPTDNLYSLVCAYEAAYNALIENDLVKSGNLPTDKNIH*
Ga0114959_1000225127	F004727	N/A	MIGRELLKAPDLFYFSESKMKVNLTYHDNDSFTVEEVVKQAVHNYGKAVQIEIMPESTMAYDHIYFGLQQLITHEQLSLLYDKDTAYQKDIKKLREQIIYKVTEIIDQVIIDNESKVG*
Ga0114959_100022513	F066790	N/A	MLSNLMQRLQDIFKPYTLDDFISDSNPQDYADIQRLEKVWQEYQNKKVFNTCY*
Ga0114959_1000225132	F095476	AGGA	VFRLGEKQPEQDGSILYYKSEYSDKDTAEHTTNYRFVDDKSIDKPTLGLRRLALQGKATLFPISSAVYFLVDIIKLAKSTTWFIDSHGQVFQHKKTTRAKLTTKKITKVLPADGIGCVLELEGVSHRFKTMVQPESYHQYAGVLYMDNGYLFYGYYEHPQKDTWRLV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114959_10002251

Overview

Ecosystem & Geography

Associated Families

Sequences