Scaffold Ga0114974_10007545

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114974_10007545

Scaffold Ga0114974_10007545

Overview

Basic Information
Taxon OID	3300009183 Open in IMG/M
Scaffold ID	Ga0114974_10007545 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7996
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (64.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002267	Metagenome / Metatranscriptome	576	Y
F078714	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000754511	F078714	N/A	MKRELLSFTVKEPKHRAHRVLFQNNTPFKPKVVQAKKSMYIRKSKHPKFDNNSDL*
Ga0114974_100075452	F002267	AGGAG	MSGIMQATIGSWNSLYTPPVLVYDLDAANYSAVPVNGSTVAGTGSYAVTVLNAGGSIGWSATNSGIFTKSNATGTDAIYGGPNYVTGQSYSVFMAYQLTATSSGRLINTQNESVKDWLMGAYNGNPNTFYPNIAVNLPSSGADTAWHFGWGTWNNTTSTGQLYIATNTQPTNYSYTATNAGGGGFNQLRLWSRSSGSEVQTANIGFIKVYNGVLDLATIQSQYATYKARFGY*

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