Scaffold Ga0114974_10022957

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114974_10022957

Scaffold Ga0114974_10022957

Overview

Basic Information
Taxon OID	3300009183 Open in IMG/M
Scaffold ID	Ga0114974_10022957 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4382
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Agriterribacter → Agriterribacter humi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F103223	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100229573	F103223	AGCAG	MKDCSNNIRVQYLSKLNGNISYGGKNVPVYGTDSFQTVPQNYIIIGDITETADNNNQLFVSGADVVIDIFSEQYMTRNNSIIDDIADQILTLLIPTTGVQDMGDAEFQIYATARTSSRYLTMQEGNNFINRKILIINNSIIQK*
Ga0114974_100229576	F004112	GAG	MIRGSESRKIDNYKQTRLLMFTMVRLMGDPKTAPKTPEALWQLPGDEESGNVMSDDEMREIFKRLGK*

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