NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10030940

Scaffold Ga0114974_10030940


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10030940 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3699
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F007470Metagenome / Metatranscriptome350Y
F049621Metagenome / Metatranscriptome146Y
F082676Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0114974_1003094010F082676AGGAMPNWVYNTLTIQGPKNEIDSIKDKLNQPYKVLHDSWNPKTNEMEVSETVYSAPVFAFWNIHSPLEDGITMEEYVQQPSRLGI
Ga0114974_100309402F049621GAGMVDLKYFNSLMLLVTGDEAEKKAAKEYLAEVDPDIWDQKK*
Ga0114974_100309406F000311GGAMYFELTAPDRLSMEMAYWDAQITGLDPQAMSPLTFNIGTGSIEKVSKIRDKYNLTESYTSDYEPTGYIRR*
Ga0114974_100309407F007470AGGAGMDYQDGFEDGVKFAREVIINNIRLWAETSDDGQILDDVAERLEFGKVDYDL*
Ga0114974_100309409F000450AGGTGGVGDRANFGFVQPNGNTVVLYGHWAGYQMLGKLADAVIAARPRWNDSSYATRIAISQIVGDQWNAETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEEAPRNDKDNKVNGMNNKAIFTQDLSAFCEKYALEQILTV*
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