NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10048313

Scaffold Ga0114974_10048313


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10048313 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2863
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006110Metagenome381Y
F007519Metagenome / Metatranscriptome349Y
F034855Metagenome / Metatranscriptome173Y
F080867Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0114974_100483132F034855GGAGMSERMDGALALADKCWSKANRTSPEFVERYLELAEELLVSKPVVLGDEFREYCGKKLLFRPKELHPNVWVSGVRTLSTLGWIAHNGYTTPTKSHNHMPSVSVWKSMIYGNDT*
Ga0114974_100483134F007519GAGGMTTGIEYLKPEQQKKGRGLGKKPALFCTSLRLPKDVMDYFNTNFAYTKQAKMREILTEYVNNQTGNKS*
Ga0114974_100483135F006110AGGAMPRPKPPEKLIGRQVRMSDRHWLILQQLGGAQWLRELLDKKAPMPKKYYEGLLNDNRN*
Ga0114974_100483138F080867N/AMNMSMNTLSLSNVVIGEDLQKSLDKEGLKLSGVYAMLDPVISRLASLNPLWTFVINSSGMHMGNNRTASSFIVKLDGEELGQIGLSYMGNRGKVIAISNDRIGKGRQRSDSYRTQDADKAILMAKKMFGKMNPNERISKAKDAAERVVTRASWNKERERTQHQSNIKNEMLAWAETKGHALFLEYLKKEAIPSLNHKVTTSMEKVELLDTEMKTIERVQQDFSKNKTALIVKDTGKYLVKIGDKVDLYDDNTLPLDMRMKMGMLKLVNDEQYLTDVGCKVTNEIFVLLVDDLTNVSEGV*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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