NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114976_10002407

Scaffold Ga0114976_10002407


Overview

Basic Information
Taxon OID3300009184 Open in IMG/M
Scaffold IDGa0114976_10002407 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11770
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038982Metagenome164Y
F040990Metagenome160Y
F100256Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0114976_1000240716F100256GAGMGFGLCLVYVKVGMIRASTADPAFNQACGNALRALPVYDLEQPRQYGQRWREAYRCRIDPNDTPGWPIRVYVFDHDADYTWFMLRWA*
Ga0114976_1000240719F040990N/AMNYYYEIDPKYDGTIFGDKWRYWCMYNCSPADNGKMCFKTHDDFMARSTRVWLENANAVYQVKPKWNLGRGQVNDREFTMIKLRAKTIKWWHDE*
Ga0114976_100024079F038982AGGAMSKMSDFLKKAADKKKGIHHVDGSDAGTTVEKKTKVKTAPPTGKKPPTRSAGRGR*
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