NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114972_10014868

Scaffold Ga0114972_10014868


Overview

Basic Information
Taxon OID3300009187 Open in IMG/M
Scaffold IDGa0114972_10014868 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5610
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009066Metagenome323Y
F026867Metagenome196Y
F042872Metagenome157Y
F048834Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0114972_1001486810F026867GAGMSLGRLNDIAMKLRQQNQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKIIPSDFDQWRLTQTGLNLPRPADRLRSAVGKAHALASRSDSRVSWRQIANTLKDEAWLHELREGNGSSAV*
Ga0114972_1001486812F048834GGAGGVAIPSVKDWAVALDAYVAGDREEVVPPGWFTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIKIKISQRGGKIGYCRRVPHYRLTAVKTGKT*
Ga0114972_1001486814F009066N/AHLAGIIRDLTNDVDAKYRKGQEEHGGALWRRPVWKDAWMEVLDLCTYVHTLKMQLSVIAELALMGAADESVVAAQSRESCRQILAVLQGFPSAQDKK*
Ga0114972_100148688F042872AGGVGSNPTPSEAYGYNDLRRNGNTAVITEPKKKHYQQHSLLIRGGYPAEPAYHPNPAVARMWSAQR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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