NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114983_1106430

Scaffold Ga0114983_1106430


Overview

Basic Information
Taxon OID3300009194 Open in IMG/M
Scaffold IDGa0114983_1106430 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)616
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F013184Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0114983_11064301F002387AGGAGGMASFLEDVNQMVIDAVYQDISEQLLEQWINNNLDEGQYYADKQFAEMSGDKFIYAEFNKFYELKEGDEDYLE*
Ga0114983_11064302F013184GAGGLNKYGFVIKLEGAVMANNEKEANEKINAHLDELGQIESAQYDLNWPDTSWELEKQ*
Ga0114983_11064303F001460GGAGMLGYTESDLNKMINAVHDSKLFYLRNPSDLMDKTELRNDLEMAVSFMQGLWAEGYFD*
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