NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103745_10009759

Scaffold Ga0103745_10009759


Overview

Basic Information
Taxon OID3300009196 Open in IMG/M
Scaffold IDGa0103745_10009759 Open in IMG/M
Source Dataset NameMicrobial communities of wastewater sludge from Singapore - Sludge1_b2_February
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1244
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge → Microbial Communities Of Wastewater Sludge From Singapore

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.2Long. (o)103.45Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048649Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0103745_100097592F048649N/AMKKLIIALAALMVSVAAYGQGQFVFNNRIGTEVNARFVLPGDAAGTSNVGSPDWTVALFGGPAGTPVANLQPLTPATTTFRGAPGSNAAGFVTSVTPTVPGVDAGGSADILVRVLGPGTSVDFGPYQVTLGGGVVVPPNLQLGTTALVVPEPTTLALAA
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