Scaffold Ga0103749_10014633

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103749_10014633

Scaffold Ga0103749_10014633

Overview

Basic Information
Taxon OID	3300009203 Open in IMG/M
Scaffold ID	Ga0103749_10014633 Open in IMG/M
Source Dataset Name	Microbial communities of wastewater sludge from Singapore - Sludge9_b2_February
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	996
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge → Microbial Communities Of Wastewater Sludge From Singapore

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.2	Long. (^o)	103.45	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052619	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103749_100146331	F052619	N/A	MKCPVYRPVYKFSRFVEARYDISTNGIAAELGAFTFSLDALPSYTDFTNLFDMYRITRIEVCFQPEYTELTDAALVSNAVNCYFNTAIDLVDASPPVNVDDLLQYQQLESTSITKQHVRKWNPTILMGGNIPCSCWLPTSNPSESHYALKYAIPPTGVAMTFRSRVRVHLEFANVN*

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