Scaffold Ga0103760_1016668

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103760_1016668

Scaffold Ga0103760_1016668

Overview

Basic Information
Taxon OID	3300009208 Open in IMG/M
Scaffold ID	Ga0103760_1016668 Open in IMG/M
Source Dataset Name	Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample 1-1
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Duisburg-Essen
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	796
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Source Dataset Sampling Location
Location Name	University Duisburg-Essen, Germany
Coordinates	Lat. (^o)	51.46	Long. (^o)	7.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000631	Metagenome / Metatranscriptome	971	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103760_10166681	F000631	AGCAGG	LVAFLALISAHGAEGSVLRARRAAQEPDTACGKGFENLVKGSQDYYATASVELWTHPYHTMDNATFGQEFQCWFASMCTTKCGGLPSQAAARKSELAKMCKSVEADWLKIWKMFSQEEVVWFKKSYPSSEVQGEQESTVFYKQAMETAKEVNKKELLCLTLFTIDDECVKWPYIRLGE*

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