NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103860_10049599

Scaffold Ga0103860_10049599


Overview

Basic Information
Taxon OID3300009243 Open in IMG/M
Scaffold IDGa0103860_10049599 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM13
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)832
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000734Metagenome / Metatranscriptome915Y
F006338Metagenome / Metatranscriptome375Y

Sequences

Protein IDFamilyRBSSequence
Ga0103860_100495991F006338N/AVVLENGMLSGPATRPKTPLAVENSVGKLAAAEMWRQMPARERELGELPSPIWSLLDR
Ga0103860_100495992F000734AGGVKTFREVGDIKKDTAELQAKSNLRVNRRDPWHWANALPKAVAVLELSGEDAERDVAGVS*

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