Scaffold Ga0103874_1014566

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103874_1014566

Scaffold Ga0103874_1014566

Overview

Basic Information
Taxon OID	3300009268 Open in IMG/M
Scaffold ID	Ga0103874_1014566 Open in IMG/M
Source Dataset Name	Eukaryotic communities of water from the North Atlantic ocean - ACM43
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Georgia
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	662
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water → Eukaryotic Communities Of Water From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location Name	North Pacific Ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088175	Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103874_10145662	F088175	N/A	WKNVQYIQSKEQFIDWKRSMGGLKRGRRPDGPRECLDTFRSYEMSEEDLKDESKTKVTTRTVSERTWYTPEAWEHGGLRIKNEVKEEMEEGFNGPNAKRVKAEKSK*

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