Scaffold Ga0103879_10001056

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103879_10001056

Scaffold Ga0103879_10001056

Overview

Basic Information
Taxon OID	3300009276 Open in IMG/M
Scaffold ID	Ga0103879_10001056 Open in IMG/M
Source Dataset Name	Eukaryotic communities of water from the North Atlantic ocean - ACM57
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Georgia
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1091
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water → Eukaryotic Communities Of Water From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location Name	North Pacific Ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002829	Metagenome / Metatranscriptome	527	Y
F035782	Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103879_100010561	F002829	GGA	VDTLLKEWTLLDNTVTELNTWVAKDKSSEGENQFSLEKMESTLGELKNIFKLKEKMVEGL
Ga0103879_100010562	F035782	GAG	MLPEDRVARTMDLQEDIAAKMEVLKGDTNTELDLLPQGSDVPKDAQNFKDELARITKYITDLAEKVRKDCDAFSEDVKFWAEYRTGIKEFTPWLVGAEKATTEGLSKPSDLNEVKALHEKVHTFEKTCLKYLQVLTAASDAAQKMTTHD*

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