NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103744_10046768

Scaffold Ga0103744_10046768


Overview

Basic Information
Taxon OID3300009281 Open in IMG/M
Scaffold IDGa0103744_10046768 Open in IMG/M
Source Dataset NameMicrobial communities of wastewater sludge from Singapore - Sludge_b1_October
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1010
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified ssDNA viruses → Circovirus-like genome RW-C(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge → Microbial Communities Of Wastewater Sludge From Singapore

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.2Long. (o)103.45Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052619Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0103744_100467681F052619N/AMKCPVYRPVYKFSRNVEARYDISTNGIAAELGAFTFSLDALPSYTDFTNLFDMYRITRIEVCFQPEYTELTDAALVSNAVNVYFNTAIDIADVSAPANVDEVLQYQQLASTPITKQHVRKWTPTILMGGNVPCSCWLPTSNPSERHYALKYGIPPTGVAMTFRSRVRLHLEFANVN*
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