Scaffold Ga0103747_10054594

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0103747_10054594

Scaffold Ga0103747_10054594

Overview

Basic Information
Taxon OID	3300009295 Open in IMG/M
Scaffold ID	Ga0103747_10054594 Open in IMG/M
Source Dataset Name	Microbial communities of wastewater sludge from Singapore - Sludge5_b2_February
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	973
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge → Microbial Communities Of Wastewater Sludge From Singapore

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.2	Long. (^o)	103.45	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052619	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103747_100545942	F052619	N/A	MKCPVYRPVYKFTRVVEESYDISTDGINPSLSAFIFKLDSLPNYQDFTRLFDMYRITKVEIDWVPEYTELTDAALVSNAVNVRFNSAVDLTDASAPASVDEVLQYQQLVSSGITKPHKRTWVPSFLMGGIVPCTCWLPTSAPSERHYALKVAIPPTGVAMTFRSRCRLFVECANVN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.