NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103865_1008102

Scaffold Ga0103865_1008102


Overview

Basic Information
Taxon OID3300009352 Open in IMG/M
Scaffold IDGa0103865_1008102 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM18
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)607
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014854Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0103865_10081021F014854N/AKPLVVSRMIPVNWGKVGSGWLARPLLNRIARCGGGGRIHQFLWSRSHAAGNANRNLAMRSDEKPLRVGSSTPSEFRAWGNRSYPEGKWLLLCISTGRMTLADSINRLKPPNESHRKVDKRSRRTGKITQARQAA*
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