Scaffold Ga0115925_10936087

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115925_10936087

Scaffold Ga0115925_10936087

Overview

Basic Information
Taxon OID	3300009354 Open in IMG/M
Scaffold ID	Ga0115925_10936087 Open in IMG/M
Source Dataset Name	Microbial communities from sand-filter backwash in Singapore swimming pools - PR-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3568
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Swimming Pool Sandfilter Backwash → Microbial Communities In Swimming Pool Backwashes

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.28967	Long. (^o)	103.85007	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038468	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115925_109360873	F038468	GGAG	MPTAKFTHEPGSPEYQASEWLMTIHNAYRELDFAIAKSPNPAEFVEKLKERVRRDYEQNREQMGWSERTRDVAERSLNVVLETLKLPNL*

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