Scaffold Ga0114993_10114308

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114993_10114308

Scaffold Ga0114993_10114308

Overview

Basic Information
Taxon OID	3300009409 Open in IMG/M
Scaffold ID	Ga0114993_10114308 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2118
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)		Depth (m)	177
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006870	Metagenome / Metatranscriptome	363	Y
F007087	Metagenome / Metatranscriptome	358	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_101143081	F007087	N/A	FVLAEDFKLVCEGEESTFRNDVLENTSKATRTLQVKDDLIVIDAMTYKSKTFDYGAIKGSSKYVKDDTQIVLETTQVSNECDTALMNVKLNRSSGMIETASKRIGACDGSSFTTSSKFMGKCK*
Ga0114993_101143082	F006870	N/A	MKKMSHILLLVLSLILTNKASSFETKLSPQGSDKYNLSIKGDAKSSEKNLRDVFQNKVNEICGTRFEIISIKMDYESEEGAKINVLNGIFKCFVKSQM*

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