NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114993_10134324

Scaffold Ga0114993_10134324


Overview

Basic Information
Taxon OID3300009409 Open in IMG/M
Scaffold IDGa0114993_10134324 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1934
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F013820Metagenome / Metatranscriptome268Y
F015741Metagenome / Metatranscriptome252Y
F022754Metagenome / Metatranscriptome213Y
F092197Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0114993_101343241F092197N/AYTTRDIRTTMKTDINGFSDQIAAIDKRSRADGLETRTAMRNAENEVRELISDTSKRWDDKLQKVDNKLQRVDTQIEALENKLDRKITKALENPLAAMSKTK*
Ga0114993_101343244F013820N/AMIDKLMPGGKTYALMGLGVLMMVCQMMGFHSFSQEAWGLLGIGGAATWKMGTDRGTTNKK
Ga0114993_101343245F022754N/AMNELVITIILMIPSPSKLVNWSVNAIPTQIQLIHESGLEVSYGASPVSCKVRPNNSKEMVFRSPDNYCYFVSDLSSPIFVRHPNHWHKVNLGE*
Ga0114993_101343246F002078AGGAGMDIAAMFEGQGWFAIVGQVVLVFTAITGSLPDKFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDEAKAKVRTRAGMPDVLDGM*
Ga0114993_101343247F015741N/AMGCSSLPLVELIPPVFNFALGFYDHNDYYSKECLWYDEVRLNDDTKKWLLENNPPEIVSKDLAQVSRNNDLYKEVCKKDKSVVDK
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