Scaffold Ga0114955_1010408

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114955_1010408

Scaffold Ga0114955_1010408

Overview

Basic Information
Taxon OID	3300009410 Open in IMG/M
Scaffold ID	Ga0114955_1010408 Open in IMG/M
Source Dataset Name	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3515
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Portugal: Porto
Coordinates	Lat. (^o)	41.162	Long. (^o)	-8.622	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052353	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114955_10104083	F052353	GAG	MSRVPLNGFPGALSPTGERRKVTRTLSPAHRHYEIAATIGPCQRAMHSCRPVLDSGAGINLVRPNVLPANWQSYAEKLERTPRMKDASNNRLIANYAIRPYIDVGCAKVFDRFFGAEHLSVPCTLGTEFMDNHVEAIFTRLKKVVWQDHVGAVTRIRRRTPILATVLANK*

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