NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114902_1011440

Scaffold Ga0114902_1011440


Overview

Basic Information
Taxon OID3300009413 Open in IMG/M
Scaffold IDGa0114902_1011440 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3059
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)6.37Alt. (m)Depth (m)2851
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F013187Metagenome273Y
F029779Metagenome187Y
F105326Metagenome100Y
F105336Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114902_101144010F105336AGGAGMKLRQQQITRVEQILSDLERKVEEMEQQDYITYDLGKDLENILFMLDMLREEIKDE*
Ga0114902_10114403F008925AGGAGMTTKSKPTINAVTLNLINKLKKIDDTINEGAWEYINIGDVIRVQDAFAEVISYYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPNAYDPSKVEEEDDE*
Ga0114902_10114404F029779AGGAGMMSDKEKYEEICEALVGIDATERYTHEDILSYIYNLKDTEEKYYDNKK*
Ga0114902_10114405F012581AGGAGVAKYTLYAKKVYYYRKDINAQDKKSAEKRSADYEADDNAERLFEPSGEEFYITSIEESDDE*
Ga0114902_10114406F013187GGAGGMPTKKIKKKPKRNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETKEMQRG*
Ga0114902_10114408F105326GGAGMEQRRNLTPKEHWELHQGLWNMLGCDMQLKYKDRTTAVYVDNKEKLKYTYSTKGFIKWFPISKEDKI*
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Institute for Fundamental Biomedical Research
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