Scaffold Ga0114953_1007463

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114953_1007463

Scaffold Ga0114953_1007463

Overview

Basic Information
Taxon OID	3300009417 Open in IMG/M
Scaffold ID	Ga0114953_1007463 Open in IMG/M
Source Dataset Name	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6903
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Sidmouth, United Kingdom
Coordinates	Lat. (^o)	50.677	Long. (^o)	-3.24	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027093	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114953_10074632	F027093	N/A	LDGRNVVAILTGSNYQVASRIWLDAGRELALRVSVDTGSGVSLVREALLPPEVKVPPLDAATAQLFDVNGGLLPVTGAVTLTARVGTYSTPVTCGVVRGMSVSLLLCTDYTDVHVPNICGPKGYIQLLDGCKVPILRRGKTVSYAKVDQPGKAGAASKADAKVGLAREVVLPPRSRG*

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