NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114908_1021897

Scaffold Ga0114908_1021897


Overview

Basic Information
Taxon OID3300009418 Open in IMG/M
Scaffold IDGa0114908_1021897 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2489
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)7.31Alt. (m)Depth (m)2520
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019232Metagenome231Y
F023481Metagenome210Y
F074143Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0114908_10218973F019232N/AMIELSFIIVCLLIVLIGVYLIKANQLFIDNQNRKYIKAINKVKPKVKTK*
Ga0114908_10218974F023481GGAGMNKENKTSIEFELKKINSSLNTLNKIMSSFLVIATSESTFKNKTNKEIKSIVPVVSSTLKAINESIYS*
Ga0114908_10218975F074143AGGAMTKTNLKSEILENINNIALGVRTDSNARLNLAVQLQNAESSKGFEFMVDVNDEDSNDKDYVAKFQTIHQLNKIGKNELKYLRDTFQQNFLQVKWKSTDKDNKPKIDALRDAIACYVPMSICSKTFGEILLKKDKNSFFTGANNSKIRVNGSYVHKYCEPLNKDNVSEVALTFAELLRVARGFYKAQGLQGDQRKSPFDIAIERATNLIFDDYNAIKPFNTSSAKSKTLINFLTVECNKWSSAYNDNQTKLKQMRKAS*
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