Basic Information | |
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Taxon OID | 3300009418 Open in IMG/M |
Scaffold ID | Ga0114908_1109845 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 914 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 39.48 | Long. (o) | 7.31 | Alt. (m) | Depth (m) | 2520 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001606 | Metagenome | 664 | N |
F043153 | Metagenome | 157 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114908_11098451 | F001606 | N/A | VDESLLTAFRIQSDDVAVEPKKFVLPNVNTGDASFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDGTNGAESYYTRPTNETAAATAVDTRTEGGSMTIQGGNEITGLYTVVSGGTATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSNANAVTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYTKN* |
Ga0114908_11098452 | F043153 | N/A | VAKMPHTTGEILPSRVKAVITYDISNYGEDLFLPFTDVGLTETALTYSGVAMTRDLENSNQPMDVFPAVFSDTDSGLL |
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