Scaffold Ga0114982

Basic Information
Taxon OID	3300009419 Open in IMG/M
Scaffold ID	Ga0114982_1000351 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009419 Open in IMG/M

Scaffold ID

Ga0114982_1000351 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24939
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (52.83%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

24939

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (52.83%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F002406	Metagenome	562	Y
F006220	Metagenome	378	Y
F009266	Metagenome / Metatranscriptome	320	Y
F009750	Metagenome	313	Y
F010398	Metagenome	304	Y
F070110	Metagenome	123	N
F077288	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100035133	F077288	AGGA	MNSFVWIYFSKTGMGYEIKGSDAISGFDAFISMDGTYLIEYALVT*
Ga0114982_100035135	F001561	GGAG	MQTREQRLKYLNKTIDTLWHGVQDTKTGDYPKIVNLYKEVLKIEPKDRDAWENMVWLMWSLAINNKDTAWLLEAEKFARRYLSIMPNGYRSYEYVGMFYRSMIKDEKLAVRFYESAIRWKDAPESTHHSLISIREKSGDKLKAIGYCKMTLARFPNDPYTKSKLKTLTQN*
Ga0114982_100035137	F009750	N/A	MKEIITAISKHGTFKENKILRPHLMDRLGIRLMFPEGSQCILWTNGRKYYARCEAFGTLFTVNIPQKMGDDIWLRFKTQFEGNYSYEDI*
Ga0114982_100035140	F010398	N/A	MVYCSCKEIGMEISIEGSVEVNYHLVIDEDVFNECCEEAGLDPANFKKFTKAQWDELNPHLIQAVVDNVADIDYTEIHCESTVYADTLTIDDSDKMTTVYYEEDRKTGSVEIL*
Ga0114982_100035141	F070110	N/A	MLLDDYPIVIWFIKKSRNSYCLYDSCGQLVMRRDEKRKKDIYQYCEDNGIDLQEEF*
Ga0114982_100035144	F006220	AGGAG	MKKRKYVEELNLASGTEMMRASRQRPIVFKDKTKYTRKDKHKNRQDKSSGDSLFMG*
Ga0114982_10003516	F002406	N/A	MENIKWIRAMSDRLRDELSKEYDEETKDLIVRAFMRGLYQDPSIVEELKSSSLIESDYFEDAE*
Ga0114982_10003518	F009266	AGAAG	MTDKERKILDKEIEYLCEQQDRVKAIREYTGINPGFTFLREVDIIESLYKSLLENRKYDKSTYFSCATSGWHVVYLRDKKTYKNGEKFNIKIFHTFVWSDNCE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114982_1000351

Overview

Ecosystem & Geography

Associated Families

Sequences