NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114982_1001410

Scaffold Ga0114982_1001410


Overview

Basic Information
Taxon OID3300009419 Open in IMG/M
Scaffold IDGa0114982_1001410 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11649
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (62.07%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034177Metagenome / Metatranscriptome175Y
F039511Metagenome / Metatranscriptome163Y
F040097Metagenome / Metatranscriptome162Y
F042327Metagenome158Y
F054862Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0114982_100141014F034177AGGMIQEQIKAIEARLEFLKTDTTKWVSAFAQPAGCTPYNHGNYFRKLERNKLKTKLKRLQKKLQIN*
Ga0114982_100141016F040097GAGMKKEARVEFGITITRPWSKEMYAHNEELAEVVKETVHQMWVDALKEAIEDYRDEDELGNLYSEMDWGQASDEMVRIQKAITYYSYCNQSIEEVADEVEETLEDMPLFQLKELVEELEIKLDKGFIGFN*
Ga0114982_10014102F054862GAGMTREQRDAAKQRVVALSSRLDAIQTLTENMSDQGGIEIANIINEIKAEIDALTKRIATKWEFLFNFKGGGWNSEVAFTREDAIEQALFNYGHPDTQEHLRVDTSTFRVSTPEDYKNQLSSFY*
Ga0114982_10014106F042327GAGMAKEREFKIDLLLAADIAQFLETLLEAELNDEFDAEEPCTDTYLDQFMPNGFISNSDLIEALLASGIVKKV*
Ga0114982_10014107F039511GAGMKREMKPLEAKIKALREAMELFDIFQQDDEVGSALAEVEAELEKFKFK*
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