Scaffold Ga0114994

Basic Information
Taxon OID	3300009420 Open in IMG/M
Scaffold ID	Ga0114994_10042747 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009420 Open in IMG/M

Scaffold ID

Ga0114994_10042747 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3144
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3144

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)	Depth (m)	67
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

73.2247

Long. (^o)

-150.2247

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027054	Metagenome / Metatranscriptome	196	N
F032856	Metagenome / Metatranscriptome	179	N
F034391	Metagenome / Metatranscriptome	175	N
F070144	Metagenome / Metatranscriptome	123	N
F093906	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100427472	F027054	N/A	MTKQKENPYKFWTVELNIGQKRNMGKLKHSKSSGYRYDFWNLKDVHDRVVKRFDAGSGNTVKAMFQFNSIYKDEPETSFYMQIQWLADVETFKEESGLSGEYMAYADRKILEDKLLILCMELEQECIAYNIKEWTSSTFYPTGKQDLIYHPNYTEEQMIFEDEYFYTFEPNKLSETTTHVTNTETVG*
Ga0114994_100427473	F034391	N/A	MTKYAKQYDNKLLGGILDHMANELKSEFGFSTLDNDDTLDIISLFVDNPDKYETAYLHSIETTDTEVVSSKEKSNVEILQDLSKYTRYDG*
Ga0114994_100427474	F032856	AGG	MDEAKYRYWSSVYTDYLIGDISDELVEEYEGKKNVTDEFTVDEDYVMQLIEYWIDNYTMGNHKCKEIIDNLSYDIFEEDDEYGVRPDGWKQAGVWALDHAIHNDDNIQAIYKMTNEKLQELWKK*
Ga0114994_100427475	F070144	GAG	MEKVNPENMGGDNWSVTKHPLHEGKYIARHINLWGSEAHTVDSLIEAIEIIDKFKNQEDWILQKREEFGDYMWRNDDFRKDITKGT*
Ga0114994_100427478	F093906	N/A	MMMFLNTNGRQGISSFNLNFEFTDEQIKLLQTYGDQITAIYYSEKNNKGKLKIQATEQPI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114994_10042747

Overview

Ecosystem & Geography

Associated Families

Sequences