NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_10058377

Scaffold Ga0114994_10058377


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_10058377 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2653
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F021402Metagenome219N
F050679Metagenome / Metatranscriptome145N
F077486Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0114994_100583772F001839AGGAMKTFEKFDTDLMNNKVLSANEKIVYIICKSFATAPRGCRISHKYLMDRTKIKTRKTLIKCLDRLTMFGMLARKQIDNSTCHYVFDKATMQEYINHNINKRRRISLGRQKSSPQINPQIDNVINIVRKDK*
Ga0114994_100583774F021402GGAGGMITTNLTVDELDRFLQISSFCDSKMPKVKAKSLPTMYKVIENAIGVGEDADSIKNLDKYAATLKITLTSRQITIYDFVLLVMLDAKASDRELIYLRNFPHRLSLRKMKRMYLDWSHTKIGYEYEKALKNVCKYANKNLKKYI*
Ga0114994_100583775F077486N/AMLNHLDSLLIESERNNMFRNNKISSNTVNMFKLDIVKIYAKKDKLKDILKCPKLQKKHKLLSFNPIESN*
Ga0114994_100583776F050679N/AMANKTKKDPKVIAEIMEELATGASIRSCLSPRNKNPARPCWQSFRLWMAKDNNLRKDYEVAKTDGIEYLLSDATDTINEALENSKFKEKTDLGQTHLIKSFIDLTKWKSERLAPKSYLKKDQLQVFGSDSSPLIVKWDK*
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