NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_10067627

Scaffold Ga0114994_10067627


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_10067627 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2444
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014154Metagenome / Metatranscriptome265Y
F043442Metagenome156Y
F099986Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0114994_100676271F014154N/AMEGDIFKIKPLDKHASKVVVDGHKTVSPFNSAKHLKTANIPALCDQCVYRSIDSGGNGKCPKYEEGAMCAIRKDFIALINELDTRNPEHVKTMLDMLAKLSFENVLMALTESKFDGNIPDRN
Ga0114994_100676272F043442AGGMEALQECKVKNVVLSFKYSYANITKFRERFDKLFVVAGTKTEPERYYELLKKHRGVYDYAIQYDVMYNMNETLKHYRKEREMGIDWTIPVLQEHYLNHLSQLRLEPDTYVCLGEVHGRDETEDQIRKLPPNLKYHGLAKGRYTTKTKLFESLDTSGWISAAMSKKCEVWNNNSTNFMFFGDKGKTMIPMLNHACEVHKEYLELINLNKQDIIDGDYKALLKAPFALLYLPMCKQLNILKDNFNL*
Ga0114994_100676274F099986N/ANDSKNPFILRSNIMPLAHELLHAVYQDGIGTHHITRKYDAPEGRAGTKGAAATVIVHDNWYGTKKTIKFWIRHKFIWLPITIPYIPIKQAKKEYSV*
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Biomedical Sciences Research Center "Alexander Fleming"
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