NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_10073813

Scaffold Ga0114994_10073813


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_10073813 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2330
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005130Metagenome / Metatranscriptome411Y
F007086Metagenome / Metatranscriptome358Y
F042973Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0114994_100738132F005130N/AMAFSIQDYLKNNKIELGKHEKAIGDSPYKGGHNDIRKTNYEVKLTKDGKLDRYTSKKIIVEGKNKRK*
Ga0114994_100738134F007086GGAMTKRELLEIIDEEIHNVKLGNISEELSESDEDTIRKMIRTEVSAIFFDLFKKRKSWGA*
Ga0114994_100738136F042973N/AQRPVNRWLAIKNDETKHPHKKMAMGLKELKYQLAETQKFFNWYNKIKTMNELDSSDYWKRTNKHIYKIKERLINIARTIQEIEK*
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