Scaffold Ga0114997

Basic Information
Taxon OID	3300009425 Open in IMG/M
Scaffold ID	Ga0114997_10002703 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009425 Open in IMG/M

Scaffold ID

Ga0114997_10002703 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14198
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (7.69%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14198

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (7.69%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)	Depth (m)	79
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

75.235

Long. (^o)

-150.0691

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017048	Metagenome / Metatranscriptome	243	Y
F031650	Metagenome / Metatranscriptome	182	Y
F067122	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_100027034	F031650	N/A	MSEVEFNDVKRAYTEAIPAGDALKHTLKEHNKEQKGRISQIHSYMRENNMMSADIGGITFEREEKTTCKVSLKTLEEVIDNPADLEQYKRDHTTTKESLKVRKPKRRRTEDTSE*
Ga0114997_100027036	F017048	N/A	MSSFNYEPSKSSLRADTVVEFVGKSLLDFKIKEIPGMGPASIQKFANHGIYTPAQILAKFLSYVDSEDATAMQVCNSFYDWANPIMGQANTHNLTFALANYAGEHGLFNYE*
Ga0114997_100027039	F067122	N/A	VECVNYSLEPNLQPADLFLYLLDTYDILLSHADGSMIFDENDDIPYVRLANKMEKYVFESWDSLFGRIPGQLKGWCCGMFVYTCICMCRWLASKPGCTSIPSETRDWMRENYLRSHSSYDTAQYSFSDILNALDIFEMRWYSFNGLSHHVLLYLDALEFRAAWFICHTAPDSVFDLRRYRIKISDHVYQIHPSAVYELYVRFLSIRRSFAQYTMFDTVPPVLEMPESRWEDFVENENRHLNIRKFRDRLAEMTWQNMNRLSEGARCSYGARGSRVTAYQSLAENRPLAVLDKLNSLTSYAKPPELHVNKTIINGLHLQMVHAHFMSTYSVSFKDFFYCSSEKTWKHRTKLPHMVVPIIIERRRRYDVMHRAILHLVPNGTFAEAFQLWLLMVRRDYRGILYGSMDFGRLCRTLFDPPEAAQQRDLADNVSAYQWDV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114997_10002703

Overview

Ecosystem & Geography

Associated Families

Sequences