NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114997_10005359

Scaffold Ga0114997_10005359


Overview

Basic Information
Taxon OID3300009425 Open in IMG/M
Scaffold IDGa0114997_10005359 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9768
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018449Metagenome / Metatranscriptome235N
F051463Metagenome / Metatranscriptome144N
F078819Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0114997_1000535914F078819N/AVLQHTEISSEVRLWRSVLKRVILDCCGIFEDSKFNNRLATRHRIIYEAESWFNDKDDYEQVCDFANMQTDNVFELKENAKKYFKNSSQERSTLLSALLDRAFSHYYGSG*
Ga0114997_1000535919F051463N/AMNINYESTSAERMYDEFFKELIIQARLKLQEILKDNKQNGISWVAIPKNSDNRYLKVATLKRVLRDKFNHHLILKSDIKHDCEHRVIIEATLSDKRGNFLSSGLAERYKDSKSSNVQKQRAIECCQTAAWGRCIKSLFAVGNDISTADEIDRSIVSDINNNDIDIDKEIS*
Ga0114997_1000535920F018449AGGAMNKLLIILLSFLLVGCAGYKPIADLKASRNANDYQEDRQHCKLLIKEEFNAFYAAWYDRELLSRCLNGRGHNVLNTYTIQN*
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