NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114997_10005451

Scaffold Ga0114997_10005451


Overview

Basic Information
Taxon OID3300009425 Open in IMG/M
Scaffold IDGa0114997_10005451 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9684
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019554Metagenome / Metatranscriptome229N
F021405Metagenome219N
F045366Metagenome / Metatranscriptome153Y
F094416Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0114997_1000545110F045366AGGMTNILTPEQVSRADEAEPHEILLAIHKRVVDTEKLMISYRNHAKNLELSLGMLTERIVSLEEKIESAKEKT*
Ga0114997_1000545112F021405AGGAGMSETSEELLDVDEEKLKYRINYIKENLLQMSNKLREEIPEDLTDQDLTEDNVFRNWIIINSIYDAANRDDADQGFNRMLYFLFDKSKGNIARLVNNYDIDIKLNGAGQLEDIKLVVMETETDETNDE*
Ga0114997_100054513F019554AGGMSLDRLKEISLFEGKSLDEIFNVIFKQSLEEREEAMSTFKKFREMVKDNEDLFMSGDKPHPYLDSAHKATENLIKMITASHKLLDLEMESKDSVNANDILDLLDREGIAPKRFMPKSDDEKENDPEESDQSIVEFPQLNKKV*
Ga0114997_100054514F094416N/AMFEVISVIFIILSVGLSIALYRSINRLSFYEDIYGDMHGRLGDLNENIQGVLSREIYTNDSIIKSFVGQLQEISYYLQQVDENYKFNTLGEEVDES*
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