NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114997_10052411

Scaffold Ga0114997_10052411


Overview

Basic Information
Taxon OID3300009425 Open in IMG/M
Scaffold IDGa0114997_10052411 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2618
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001802Metagenome / Metatranscriptome632Y
F007611Metagenome / Metatranscriptome348Y
F025154Metagenome203Y
F029277Metagenome / Metatranscriptome189Y
F103909Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114997_1005241110F103909AGGAGMRDYSITRKEGEWYNAKVTDSFGVDHQNYFEHAHEANDWIMYVWAKELPPLTDEEREELLANAIHDCKQIDAESGRRAIL*
Ga0114997_1005241112F029277N/AMNREELKRLFLTFPTLDIPEKKQIIVDYNNNLYWPGYGSVEVLRDGPDGYSSFKSHQENPFLFVSEREEFASGEYELIVK*
Ga0114997_100524113F025154N/AMSPWDMVAKLGIYTDEQIDEMTWAECEEILNQEE*
Ga0114997_100524114F001802N/AMKTIKHLKNDYVQLGNQIYRPYKVCDVPNNFGCLEFNEKEGISEWFNYKGYTYLFDKMAKS*
Ga0114997_100524115F007611N/AMKKKWITVLDYETSRVYQYKVAIHKHAEDYITFKGHRLSNVEWMEHQNNTPITN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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