Scaffold Ga0114915_1014026

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114915_1014026

Scaffold Ga0114915_1014026

Overview

Basic Information
Taxon OID	3300009428 Open in IMG/M
Scaffold ID	Ga0114915_1014026 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2991
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043629	Metagenome	156	Y
F079229	Metagenome	116	Y
F092731	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_10140262	F043629	GGA	MANSTINIIVDVLSVDVMLEVEVQWHMSEANELTIDDFYGYHFDNKTGEYERIPYWMHKIIETTQLLEEEYLREIEEAADDNL*
Ga0114915_10140265	F092731	GGAGG	MSKSKLSTQATTVYNTLLELNWSEPYLTLEHIQAATGLGRSKLLPKLAELISASKVLHGNEEALGELIETYTPKVKGVAYGYPLDYYKNYNEWMENKLDLPLT*
Ga0114915_10140266	F079229	AGG	MTLLQKLDSIQYDFNFQHAIVTNDADLLVSVLRDHGVILTIAKANELIVNLKKGGASHEQK*

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