Basic Information | |
---|---|
Taxon OID | 3300009428 Open in IMG/M |
Scaffold ID | Ga0114915_1014026 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2991 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | South Georgia Island | |||||||
Coordinates | Lat. (o) | -50.35 | Long. (o) | -39.82 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F043629 | Metagenome | 156 | Y |
F079229 | Metagenome | 116 | Y |
F092731 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114915_10140262 | F043629 | GGA | MANSTINIIVDVLSVDVMLEVEVQWHMSEANELTIDDFYGYHFDNKTGEYERIPYWMHKIIETTQLLEEEYLREIEEAADDNL* |
Ga0114915_10140265 | F092731 | GGAGG | MSKSKLSTQATTVYNTLLELNWSEPYLTLEHIQAATGLGRSKLLPKLAELISASKVLHGNEEALGELIETYTPKVKGVAYGYPLDYYKNYNEWMENKLDLPLT* |
Ga0114915_10140266 | F079229 | AGG | MTLLQKLDSIQYDFNFQHAIVTNDADLLVSVLRDHGVILTIAKANELIVNLKKGGASHEQK* |
⦗Top⦘ |