NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114915_1025472

Scaffold Ga0114915_1025472


Overview

Basic Information
Taxon OID3300009428 Open in IMG/M
Scaffold IDGa0114915_1025472 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2069
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031652Metagenome182N

Sequences

Protein IDFamilyRBSSequence
Ga0114915_10254722F031652AGGALVPQLKIYTFGTKYFIDTYSQGLHEDCKAYDYDLAIEVIPDAENFSHINHHIHLRMVEVVKNAGDNDRILFLDPECRIVKPIPQDWIDDARPLVCYKIEQDKLDINRYEYGHTLPGPIQMQPIFLSALDITWIQWWYDASMAASDPENSQYTPHELFLELALKFNKVDMHVEHCVYNRAWQQPQRVVKGSFVTADTIITHPDIHALLDPNVKHATQHIKDSPFMPPRKLHNHFNDLATIKQIDELMFREQHDITKWPEGTVAEGEWYVVDNWMFDPKLGRLGHKDFESTKYHFSLEQKIERGINTPAVKNFTKQSTNE*
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Institute for Fundamental Biomedical Research
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