NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120406_11303795

Scaffold Ga0120406_11303795


Overview

Basic Information
Taxon OID3300009429 Open in IMG/M
Scaffold IDGa0120406_11303795 Open in IMG/M
Source Dataset NameMicrobial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS844 no min length
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)545
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Diffuse Flow Fluid → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean

Source Dataset Sampling Location
Location NameMid-Cayman Rise
CoordinatesLat. (o)18.374735Long. (o)-81.797326Alt. (m)Depth (m)2376
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025922Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0120406_113037951F025922N/ARRMKDMARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIVDVVDDVPAVAVTLNTNDFGDVRTLAVLAQLPAVKRAMDATADSTTGNLVVVSGTDYTPTSTYLHGVSLADFAVVCGNLPGVTMWAPVQDECSLGTLDNNIDQTLFLDEVYVNSLEFGYTTGANATENYG
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