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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009432 Open in IMG/M |
| Scaffold ID | Ga0115005_10003708 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12216 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 79.0225 | Long. (o) | -9.5247 | Alt. (m) | Depth (m) | 17 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F061294 | Metagenome / Metatranscriptome | 132 | Y |
| F094427 | Metagenome / Metatranscriptome | 106 | Y |
| F098084 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0115005_100037083 | F098084 | GAG | MICLYPNYLAMRLLLVLLLLVSVTSYAGRPSQCDKPMHSDHIIYDCYGDWAVRHVFQRGELKHKYSDATTVMDVGWFGSTEFQINRRQDGSIYYIIPSQIDRVEMTIGGQVFVAEQGPSAVFYGAITAPMLVAISQAESLINLLIYSEGQTIEASFSATGSNAALRWIGAID* |
| Ga0115005_100037087 | F094427 | AGGAG | MDLNLLQPNISQQISSVEHLQVELLMLYGDSCDIGEGKHYTSLTRRGLKRLMKDMRHVQQHLQSLRSTYLIDADGATVLTVGHKYDHVAANRGISRASY* |
| Ga0115005_100037088 | F061294 | AGGGGG | VQAIDTFESRCVDYQEDRVTSATTALKAYLLSHKVVYSEVNYMVPEQPPTVEMLSIVVKDVCQGESSYTFVFEQMAARYLALVGDEGISPRVIFYYVSNVIISLLVLSRQNSQLSAEILIKIIQRFNFRDAVLRAGIEVIAEEVLRRCFLAINQPTSCLEKKSSNIKRASN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |