NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115005_10022415

Scaffold Ga0115005_10022415


Overview

Basic Information
Taxon OID3300009432 Open in IMG/M
Scaffold IDGa0115005_10022415 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4889
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)79.0225Long. (o)-9.5247Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003769Metagenome / Metatranscriptome469Y
F011629Metagenome / Metatranscriptome289N
F047991Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0115005_100224151F011629GAGGMLSNWTKLESLNTTQVKDIVKRRFGGSITKVYLNKCYSNKKEIADKRNMAFAVDGTRFANVDLVALAQEIGCKRVKLHTAYLRGFADGCWLRLQHVNYNK*
Ga0115005_100224154F003769AGGMQTQLLKTITVKTSNKVESVHIDCVYTILENCFNKLQLVEADCTGSNYYINSANIFAQLQSLYVENADNNYVSLQSVMEVFANNITYYDESSLFTQVVENTVLQNVQLENYVSLSN*
Ga0115005_100224159F047991GAGGMQTQNLIAENNSFSCANIQDVLKRFKKRHKFAKQQQLSNNVTCTSIYTDDVDICFMFNVVHNNTTYVVDVYANYNNSYVSGNVYDCSCVQTATQILKQHFNLNVTFTANYEDTEIYYNAK
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