Scaffold Ga0115005_10046493

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115005_10046493

Scaffold Ga0115005_10046493

Overview

Basic Information
Taxon OID	3300009432 Open in IMG/M
Scaffold ID	Ga0115005_10046493 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3330
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean
Coordinates	Lat. (^o)	79.0225	Long. (^o)	-9.5247	Alt. (m)		Depth (m)	17
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012624	Metagenome	279	N
F012723	Metagenome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115005_100464934	F012624	N/A	MLTNYKGNSAHLKALKLARIEQTIADGVVYLSLTLGALALLSFLNWAIIARYGA*
Ga0115005_100464936	F012723	N/A	VDKMSNDDIKAYFDGSNITLAELSAMTGKSIKQLKTILMGG*

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