NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115005_10087884

Scaffold Ga0115005_10087884


Overview

Basic Information
Taxon OID3300009432 Open in IMG/M
Scaffold IDGa0115005_10087884 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2384
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)79.0225Long. (o)-9.5247Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002542Metagenome / Metatranscriptome550Y
F037238Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
Ga0115005_100878842F037238AGGAGMSFRPFDLLNLVRDFGQPLTLRKVTADGAYNPATGAVDGSATTDYSITAYLYNYNVGVPAGDSEVVRGTRKCVISALGLSAVPDFDDLIVGSGDTVKVVSVMSIFSAGTAVGYICNVGE*
Ga0115005_100878844F002542GGAGMHPTYLGLQIDWPLFIKMPLNANGKLWKIGDHFNWLERGIDPDKVASLYVTQYVHHNAELEVQNKVGDRLSELAGKQLETLVNLMNAEVKKRTSSDTEFASKKCKKSKIDDKQRGLIRRFLNVSHWITEDFYEIRDSIIK*
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