NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115005_10320612

Scaffold Ga0115005_10320612


Overview

Basic Information
Taxon OID3300009432 Open in IMG/M
Scaffold IDGa0115005_10320612 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1221
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)79.0225Long. (o)-9.5247Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012624Metagenome279N
F012723Metagenome278Y
F038412Metagenome166Y
F101912Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0115005_103206122F012624AGGCGGMLNNYKGNSAHLKALKLARIEQHIADGVVCLSLSLGVGALFTFLNWAMIARYGA*
Ga0115005_103206124F101912GGGGGMQALAIFKNDRLAPVSYVANIRGRGIKHIQTLVYRFADEHGFNYSHITYHKHRDEYPTIAAKQSTPYYKEV*
Ga0115005_103206125F012723N/AVDKMSNDDIKAYFDGSNITLAELSAMTGKSIKQLKTILMGV*
Ga0115005_103206126F038412N/AFRLNGTSDLDWSHIINKRPASMFYDYSKVLSNVRKNTLANYDLTYSASMYSKQSRAAFKKAVKAGHRIAVAFNTKGLASDELQISHQLASFDKTDLRHLDGQVIGTLTRKGSSKAVRAADNLQANSFFVTAANLVAFNDIIAIGG*
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